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"doclist":{"numFound":23,"start":0,"docs":[ { "assembly_composition":["protein/protein complex"], "assembly_form":["hetero"], "assembly_id":["1"], "assembly_type":["33-mer"], "biological_cell_component":["mitochondrial processing peptidase complex", "mitochondrion", "mitochondrial matrix"], "biological_function":["peptidase activity", "metal ion binding", "metalloendopeptidase activity", "metallopeptidase activity", "hydrolase activity"], "biological_process":["protein processing involved in protein targeting to mitochondrion", "proteolysis"], "citation_authors":["Moe A", "Dimogkioka AR", "Rapaport D", "Ojemyr LN", "Brzezinski P"], "citation_doi":"10.1073/pnas.2307697120", "citation_title":"Structure and function of the S. pombe III-IV-cyt c supercomplex.", "citation_year":2023, "compound_id":["CU", "HEM", "PCF", "CA", "CUA", "MG", "PEF", "U10", "FES", "ZN", "CA", "CU", "HEA", "CUA", "HEM", "PCF", "ZN", "HEC", "MG", "CDL", "FES", "PEF", "U10"], "compound_name":["CU : copper(+2) cation", "HEM : [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]iron", "PCF : (2R)-2,3-bis(hexadecanoyloxy)propyl 2-(trimethylammonio)ethyl phosphate", "CA : calcium(+2) cation", "CUA : dicopper(Cu-Cu)", "MG : magnesium", "PEF : (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propane-1,2-diyl dihexadecanoate", "U10 : 2-[(2E,6E,10E,14E,18E,22E,26E,30E,34E)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaen-1-yl]-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione", "FES : 1,3-dithia-2$l^{2},4$l^{2}-diferracyclobutane", "ZN : zinc(+2) cation", "CA : calcium", "CU : copper(2+)", "HEA : [3,3'-{7-ethenyl-17-formyl-12-[(1S,4E,8E)-1-hydroxy-5,9,13-trimethyltetradeca-4,8,12-trien-1-yl]-3,8,13-trimethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipropanoato(2-)]iron", "CUA : cupriocopper", "HEM : 3-[(5Z,10Z,14Z,19Z)-18-(2-carboxyethyl)-8,13-bis(ethenyl)-3,7,12,17-tetramethyl-21,23-dihydroporphyrin-2-yl]propanoic acid", "PCF : [(2R)-2,3-di(hexadecanoyloxy)propyl] 2-trimethylazaniumylethyl phosphate", "ZN : zinc", "HEC : {3,3'-[(7E,12E)-7,12-diethylidene-3,8,13,17-tetramethyl-7,12,22,24-tetrahydroporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~]dipropanoato(4-)}iron", "MG : magnesium(+2) cation", "CDL : [3-[[(2~{R})-2,3-di(octadecanoyloxy)propoxy]-oxidanidyl-phosphoryl]oxy-2-oxidanyl-propyl] [(2~{R})-2,3-di(octadecanoyloxy)propyl] phosphate", "FES : di-mu-sulfidediiron", "PEF : [(2R)-1-(2-aminoethoxy-hydroxy-phosphoryl)oxy-3-hexadecanoyloxy-propan-2-yl] hexadecanoate", "U10 : 2-[(2E,6E,10E,14E,18E,22E,26E,30E,34E)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl]-5,6-dimethoxy-3-methyl-cyclohexa-2,5-diene-1,4-dione"], "compound_systematic_name":["FES : 1,3-dithia-2$l^{2},4$l^{2}-diferracyclobutane", "PEF : (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propane-1,2-diyl dihexadecanoate", "ZN : zinc", "ZN : zinc(+2) cation", "CU : copper(+2) cation", "HEA : [3,3'-{7-ethenyl-17-formyl-12-[(1S,4E,8E)-1-hydroxy-5,9,13-trimethyltetradeca-4,8,12-trien-1-yl]-3,8,13-trimethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipropanoato(2-)]iron", "CA : calcium", "CUA : dicopper(Cu-Cu)", "CUA : cupriocopper", "HEC : {3,3'-[(7E,12E)-7,12-diethylidene-3,8,13,17-tetramethyl-7,12,22,24-tetrahydroporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~]dipropanoato(4-)}iron", "MG : magnesium", "HEM : [3,3'-(7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~)dipropanoato(2-)]iron", "HEM : 3-[(5Z,10Z,14Z,19Z)-18-(2-carboxyethyl)-8,13-bis(ethenyl)-3,7,12,17-tetramethyl-21,23-dihydroporphyrin-2-yl]propanoic acid", "U10 : 2-[(2E,6E,10E,14E,18E,22E,26E,30E,34E)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaen-1-yl]-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione", "PEF : [(2R)-1-(2-aminoethoxy-hydroxy-phosphoryl)oxy-3-hexadecanoyloxy-propan-2-yl] hexadecanoate", "FES : di-mu-sulfidediiron", "MG : magnesium(+2) cation", "PCF : (2R)-2,3-bis(hexadecanoyloxy)propyl 2-(trimethylammonio)ethyl phosphate", "PCF : [(2R)-2,3-di(hexadecanoyloxy)propyl] 2-trimethylazaniumylethyl phosphate", "CA : calcium(+2) cation", "CDL : [3-[[(2~{R})-2,3-di(octadecanoyloxy)propoxy]-oxidanidyl-phosphoryl]oxy-2-oxidanyl-propyl] [(2~{R})-2,3-di(octadecanoyloxy)propyl] phosphate", "CU : copper(2+)", "U10 : 2-[(2E,6E,10E,14E,18E,22E,26E,30E,34E)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl]-5,6-dimethoxy-3-methyl-cyclohexa-2,5-diene-1,4-dione"], "compound_weight":[63.546, 616.487, 734.039, 40.078, 127.092, 24.305, 691.959, 863.343, 175.82, 65.409, 40.078, 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C1565.01", "Cytochrome b-c1 complex subunit 7", "Cytochrome c oxidase subunit 3", "Cytochrome c oxidase subunit 6, mitochondrial", "Cytochrome c oxidase subunit 7", "Cytochrome c oxidase subunit 13, mitochondrial"], "interpro_accession":["IPR050361", "IPR011249", "IPR007863", "IPR001431", "IPR011765"], "interpro_name":["Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase Complex", "Metalloenzyme, LuxS/M16 peptidase-like", "Peptidase M16, C-terminal", "Peptidase M16, zinc-binding site", "Peptidase M16, N-terminal"], "journal":"Proc Natl Acad Sci U S A", "journal_page":"e2307697120", "journal_volume":"120", "max_observed_residues":443, "model_quality":68.75, "modified_residue_flag":"N", "molecule_name":["Probable mitochondrial-processing peptidase subunit beta"], "molecule_synonym":["Beta-MPP", "Probable mitochondrial-processing peptidase subunit beta", "PEP"], "molecule_type":"Protein", "number_of_bound_entities":13, "number_of_polymer_entities":23, 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"sample_preparation_method":["Natural"], "spacegroup":"P 1", "status":"REL", "tax_id":[4896], "title":"III2-IV1 respiratory supercomplex from S. pombe", "uniprot_coverage":[1.0], "uniprot_id":["MPPB_SCHPO"]}] }}, { "groupValue":"7k7v", "doclist":{"numFound":1,"start":0,"docs":[ { "assembly_composition":["protein structure"], "assembly_form":["homo"], "assembly_id":["1"], "assembly_type":["monomer"], "beam_source_name":["Synchrotron"], "biological_process":["chromatin remodeling"], "citation_authors":["Newman J", "Nebl T", "Van H", "Peat TS"], "citation_doi":"10.1107/S2053230X20015216", "citation_title":"The X-ray crystal structure of the N-terminal domain of Ssr4, a Schizosaccharomyces pombe chromatin-remodelling protein.", "citation_year":2020, "compound_id":["GOL", "CL", "IOD"], "compound_name":["GOL : propane-1,2,3-triol", "CL : chloride", "IOD : iodide"], "compound_systematic_name":["GOL : propane-1,2,3-triol", "IOD : iodide", "CL : chloride"], "compound_weight":[92.094, 35.453, 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(2S)-2-amino-4-(methylselanyl)butanoic acid", "MSE : (2S)-2-amino-4-methylselanyl-butanoic acid", "FAD : [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-benzo[g]pteridin-10-yl)-2,3,4-trihydroxy-pentoxy]-hydroxy-phosphoryl] hydrogen phosphate", "NDP : [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate"], "compound_weight":[785.55, 745.421, 785.55, 196.106, 92.094, 196.106], "crystallisation_ph":[5.6], "data_quality":33.58, "data_scaling_software":["SCALEPACK"], "deposition_date":"2006-05-02T01:00:00Z", "deposition_site":"RCSB", "detector":["CCD"], "detector_type":["ADSC QUANTUM 315"], "diffraction_protocol":["Single wavelength"], "entity_weight":50179.543, "entry_authors":["Eswaramoorthy S", "Swaminathan S", "Burley SK", "New York SGX Research Center for Structural Genomics 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Coli", "Escherichia Coli", "Ecolx", "Bacterium 10a", "Escherichia Sp. 3_2_53faa", "Bacillus Coli", "Bacterium Coli", "Bacterium Coli Commune", "Bacterium E3", "Achromobacter Sp. Atcc 35328", "Escherichia/Shigella Coli", "Enterococcus Coli", "Escherichia Sp. 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"compound_systematic_name":["ATP : adenosine 5'-(tetrahydrogen triphosphate)", "A1AIV : 4-azanylbutanenitrile", "ATP : [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate", "MG : magnesium", "A1AIV : 4-aminobutanenitrile", "MG : magnesium(+2) cation"], "compound_weight":[84.12, 24.305, 507.181, 24.305, 84.12, 507.181], "data_quality":-1.0, "deposition_date":"2024-03-22T01:00:00Z", "deposition_site":"RCSB", "ec_hierarchy_name":["Ligases", "Forming carbon-sulfur bonds", "Acid--thiol ligases", "E1 ubiquitin-activating enzyme."], "ec_number":["6.2.1.45"], "emdb_id":["emd-44225"], "entity_weight":111764.05, "entry_authors":["Kochanczyk T", "Lima CD"], "entry_uniprot_accession":["P46595", "P0CH07", "O94609"], "enzyme_name":["E1 ubiquitin-activating enzyme."], "enzyme_systematic_name":["ubiquitin:[E1 ubiquitin-activating enzyme] ligase (AMP-forming)"], "experiment_data_available":["y"], "experimental_method":["Electron 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