line 4 is too short: the value for --reference-column is 2
can't find feature with name "mcl1-3(mcl1-3xHA)" at line 5 - skipping
can't find feature with name "mcl1-4(mcl1-3xFLAG)" at line 6 - skipping
line 7 is too short: the value for --reference-column is 2
line 8 is too short: the value for --reference-column is 2
line 9 is too short: the value for --reference-column is 2
line 10 is too short: the value for --reference-column is 2
line 11 is too short: the value for --reference-column is 2
line 16 is too short: the value for --reference-column is 2
can't find feature with name "cnd2-TEV" at line 24 - skipping
can't find feature with name "alp7-5A(S50A,S51A,T100A,T116A,T131A)" at line 90 - skipping
can't find feature with name "alp7-5A(K341,Y344,R346,K347,Y348)" at line 91 - skipping