format-version: 1.2
date: 13:07:2012 17:15
saved-by: midori
default-namespace: go/extensions/gorel
ontology: go/extensions/gorel

[Typedef]
id: POMBASE_GENE_EX_REL:during
name: during
def: "happens_during or exists_during." [BFO:cjm]
is_transitive: true
comment: use with GO term for cell cycle phase, response, etc.

[Typedef]
id: POMBASE_GENE_EX_REL:in_absence_of
name: in_absence_of
def: "a substance is absent" [PomBase:mah]
comment: link between gene expression and a chemical; use when expression is observed in the absence of the chemical

[Typedef]
id: POMBASE_GENE_EX_REL:in_presence_of
name: in_presence_of
def: "a substance is present" [PomBase:mah]
comment: link between gene expression and a chemical; use when expression is observed in the presence of the chemical

[Typedef]
id: POMBASE_GENE_EX_REL:has_direct_input
name: has_direct_input
namespace: go/extensions/gorel
alt_id: directly_localizes
alt_id: GOREL:0000019
alt_id: GOREL:0000504
alt_id: has_direct_target
alt_id: has_substrate
comment: If the entity is indirectly bound/acted upon by the gene product that is the subject of an annotation,  then the relation: has_indirect_input should be considered [GOC:ecd]
comment: This relation is part of the ShEx speficications.
synonym: "directly_localizes" NARROW [GOC:ecd]
synonym: "has_direct_target" EXACT [GOC:ecd]
synonym: "has_substrate" NARROW [GOC:ecd]
is_a: has_input ! has input

[Typedef]
id: POMBASE_GENE_EX_REL:directly_localizes
name: directly_localizes
namespace: go/extensions/gorel
is_a: has_input ! has input

[Typedef]
id: POMBASE_GENE_EX_REL:regulates_activity_of
namespace: go/extensions/gorel
name: regulates activity of

[Typedef]
id: POMBASE_GENE_EX_REL:not_exists_during
namespace: go/extensions/gorel
name: not_exists_during

[Typedef]
id: POMBASE_GENE_EX_REL:not_happens_during
name: not_happens_during
namespace: go/extensions/gorel