can't find new term for dephosphorylated in mapping for PSI-MOD can't find new term for dephosphorylated in mapping for PSI-MOD can't find feature for: SLCA33 ortholog (SLCA33) not found can't find feature for: SLCA35 ortholog (SLCA35) not found allele "aur1R" is not in the form "name(description)" - storing as "aur1R(unknown)" allele "vas1-1" is not in the form "name(description)" - storing as "vas1-1(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0032974 EMBL file: amino acid export from vacuole Chado name for ID: amino acid transmembrane export from vacuole allele "rad31-1" is not in the form "name(description)" - storing as "rad31-1(unknown)" allele "cut23-194" is not in the form "name(description)" - storing as "cut23-194(unknown)" allele "cut23-PD26" is not in the form "name(description)" - storing as "cut23-PD26(unknown)" allele "vas2-1" is not in the form "name(description)" - storing as "vas2-1(unknown)" allele "vas2-1" is not in the form "name(description)" - storing as "vas2-1(unknown)" allele "cyj150" is not in the form "name(description)" - storing as "cyj150(unknown)" allele "Scm3-6|Scm3-19" is not in the form "name(description)" - storing as "Scm3-6|Scm3-19(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0032974 EMBL file: amino acid export from vacuole Chado name for ID: amino acid transmembrane export from vacuole more than one cvtermsynonym found for apoptosis at /home/kmr44/git/pombase-run/lib/PomBase/Role/CvQuery.pm line 158. allele "caf3-89" is not in the form "name(description)" - storing as "caf3-89(unknown)" allele "Lsd-H518" is not in the form "name(description)" - storing as "Lsd-H518(unknown)" allele "sev4-L5" is not in the form "name(description)" - storing as "sev4-L5(unknown)" can't find new term for mature peptide sequence is YTPKVPYM in mapping for sequence allele "non-phosphorylatable on Ser52" is not in the form "name(description)" - storing as "non-phosphorylatable on Ser52(unknown)" allele "mcl1-1" is not in the form "name(description)" - storing as "mcl1-1(unknown)" allele "P-ND149|P-ND95|P-ND60" is not in the form "name(description)" - storing as "P-ND149|P-ND95|P-ND60(unknown)" allele "P-ND149|P-ND95|P-ND60" is not in the form "name(description)" - storing as "P-ND149|P-ND95|P-ND60(unknown)" "with" identifier "UniProtKB:" is not in the form db:accession allele "cgs1-1" is not in the form "name(description)" - storing as "cgs1-1(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0000160 EMBL file: two-component signal transduction system (phosphorelay) Chado name for ID: phosphorelay signal transduction system allele "lid1-26" is not in the form "name(description)" - storing as "lid1-26(unknown)" allele "cut8-563" is not in the form "name(description)" - storing as "cut8-563(unknown)" allele "vas3-1" is not in the form "name(description)" - storing as "vas3-1(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0000160 EMBL file: two-component signal transduction system (phosphorelay) Chado name for ID: phosphorelay signal transduction system can't find new term for mature peptide sequence is YTPKVPYM in mapping for sequence can't find feature for: MEI4 ortholog (MEI4) not found allele "Mia1p-MutNES4" is not in the form "name(description)" - storing as "Mia1p-MutNES4(unknown)" allele "Mia1p-MutNES4" is not in the form "name(description)" - storing as "Mia1p-MutNES4(unknown)" allele "edt1-1" is not in the form "name(description)" - storing as "edt1-1(unknown)" "with" identifier "S000001635" is not in the form db:accession can't find feature for: FAM48B1 ortholog (FAM48B1) not found can't find feature for: FAM48B2 ortholog (FAM48B2) not found can't find feature for: SGD:S000029663 ortholog (SGD:S000029663) not found can't find feature for: SGD:S000029664 ortholog (SGD:S000029664) not found can't find feature for: SGD:S000029665 ortholog (SGD:S000029665) not found can't find feature for: SGD:S000029662 ortholog (SGD:S000029662) not found "with" identifier "S000002990" is not in the form db:accession "with" identifier "S000002990" is not in the form db:accession allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)" allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)" allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)" allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0032975 EMBL file: amino acid import into vacuole Chado name for ID: amino acid transmembrane import into vacuole can't find new term for mature peptide sequence is YTPKVPYM in mapping for sequence allele "uvde_delta" is not in the form "name(description)" - storing as "uvde_delta(unknown)" allele "it7-235" is not in the form "name(description)" - storing as "it7-235(unknown)" allele "rad6-165" is not in the form "name(description)" - storing as "rad6-165(unknown)" allele "wis1-DD" is not in the form "name(description)" - storing as "wis1-DD(unknown)" "with" identifier "UniProtKB:" is not in the form db:accession allele "sep9-307" is not in the form "name(description)" - storing as "sep9-307(unknown)" allele "sep9-307" is not in the form "name(description)" - storing as "sep9-307(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0032975 EMBL file: amino acid import into vacuole Chado name for ID: amino acid transmembrane import into vacuole allele "mis3-244" is not in the form "name(description)" - storing as "mis3-244(unknown)" allele "mis3-244" is not in the form "name(description)" - storing as "mis3-244(unknown)" allele "mis3-244" is not in the form "name(description)" - storing as "mis3-244(unknown)" allele "prp1-4|prp1-1" is not in the form "name(description)" - storing as "prp1-4|prp1-1(unknown)" found cvterm by ID, but name doesn't match any cvterm: GO:0032975 EMBL file: amino acid import into vacuole Chado name for ID: amino acid transmembrane import into vacuole allele "med8-del-107-200" is not in the form "name(description)" - storing as "med8-del-107-200(unknown)" allele "sep15-598" is not in the form "name(description)" - storing as "sep15-598(unknown)" allele "med8-del-107-200" is not in the form "name(description)" - storing as "med8-del-107-200(unknown)" allele "med8-del-107-200" is not in the form "name(description)" - storing as "med8-del-107-200(unknown)" allele "sep15-598" is not in the form "name(description)" - storing as "sep15-598(unknown)" allele "mcs4-13" is not in the form "name(description)" - storing as "mcs4-13(unknown)" allele "cdc23()" is not in the form "name(description)" - storing as "cdc23()(unknown)" allele "ark1-T7" is not in the form "name(description)" - storing as "ark1-T7(unknown)" qualifier not in the form "key=value": "fructose transmembrane transporter activity" allele "dim1-35" is not in the form "name(description)" - storing as "dim1-35(unknown)" allele "gad2-1" is not in the form "name(description)" - storing as "gad2-1(unknown)" "with" identifier "UniProtKB:" is not in the form db:accession found cvterm by ID, but name doesn't match any cvterm: GO:0000160 EMBL file: two-component signal transduction system (phosphorelay) Chado name for ID: phosphorelay signal transduction system more than one cvtermsynonym found for apoptosis at /home/kmr44/git/pombase-run/lib/PomBase/Role/CvQuery.pm line 158. allele "htbK119R" is not in the form "name(description)" - storing as "htbK119R(unknown)" failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to in annotation extension for SPCC18B5.01c, can't parse identifier: (GO:0072690 failed to add annotation extension to SPAC17C9.16c <-> RNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC17A2.01 <-> transcription: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC17A2.01 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBPJ4664.06 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=unchanged failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=unchanged failed to add annotation extension to SPBC1105.02c <-> protein level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC18B11.04 <-> protein level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBPJ4664.06 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBPJ4664.03 <-> mRNA level: annotation extension qualifier on SPBPJ4664.03 not understood: annotation_extension=during(GO:0006995) failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAPB8E5.03 <-> RNA level: can't find relation cvterm for: in_response_to in annotation extension for SPCC663.03, can't parse identifier: (GO:0072690 failed to add annotation extension to SPAC17A2.01 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=unchanged failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=unchanged failed to add annotation extension to SPMTR.01 <-> mRNA level: annotation extension qualifier on SPMTR.01 not understood: occurs_in=CL:0002675 failed to add annotation extension to SPBC32F12.03c <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC649.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPMTR.02 <-> mRNA level: annotation extension qualifier on SPMTR.02 not understood: occurs_in=CL:0002675 failed to add annotation extension to SPBPJ4664.06 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC646.09c <-> RNA level: annotation extension qualifier on SPBC646.09c not understood: during() failed to add annotation extension to SPAC3A12.14 <-> mRNA level: annotation extension qualifier on SPAC3A12.14 not understood: qualifier=present failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAPB8E5.05 <-> mRNA level: annotation extension qualifier on SPAPB8E5.05 not understood: annotation_extension=during(GO:0006995) failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=unchanged failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC1198.14c <-> transcription: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC17A2.01 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPMTR.01 <-> mRNA level: annotation extension qualifier on SPMTR.01 not understood: occurs_in=CL:0002675 failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=unchanged failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC1105.02c <-> RNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPBC17A3.07 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC1D4.11c.1 <-> intracellular signal transduction: Can't call method "name" on an undefined value at /home/kmr44/git/pombase-run/lib/PomBase/Chado/ExtensionProcessor.pm line 204. failed to add annotation extension to SPMTR.02 <-> mRNA level: annotation extension qualifier on SPMTR.02 not understood: occurs_in=CL:0002675 failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood: qualifier=present failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to failed to add annotation extension to SPAC513.03 <-> mRNA level: annotation extension qualifier on SPAC513.03 not understood: annotation_extension=during(GO:0006995)