This directory contains data from the monthly release of PomBase for 2024-06-01.

PomBase is a comprehensive knowledgebase for the fission yeast
Schizosaccharomyces pombe, providing literature curation, analysis tools, genome
annotation and access to large-scale data sets.

Website: https://www.pombase.org

For help with any of these datasets please contact the PomBase helpdesk:
helpdesk@pombase.org

Please cite any use of this data:
  Kim Rutherford, Manuel Lera-Ramírez, Valerie Wood
  PomBase: a Global Core Biodata Resource — growth, collaboration, and sustainability
  Genetics, February 2024
  https://doi.org/10.1093/genetics/iyae007


Contents of this release:

  chado_database:
    - PostgreSQL database dumps in Chado (http://gmod.org/wiki/Chado) format

  curated_orthologs:
    - curated ortholog sets for pombe-human, pombe-cerevisiae and
      pombe-japonicus

  exports_for_external_resources:
    - files generated for the use of the other databases and resources

  gene_expression:
    -

  gene_names_and_identifiers:
    - PomBase gene identifiers, names, gene products, feature types,
      UniProt IDs

  gene_ontology:
    - Gene ontology annotation for S. pombe

  genome_sequence_and_features:
    - genome, gene and protein sequence data (FASTA format)
    - gene, exon, intron and cds coordinates
    - GFF and EMBL format files

  human_disease_annotation:
    - pombe disease associations using the MONDO ontology

  macromolecular_complexes:
    - pombe annotation for macromolecular complexes

  phenotypes_and_genotypes:
    - Gene Ontology, phenotype, , disease association, complexes,
      gene expression and other datasets

  protein_features:
    - protein modifications
    - protein families and domains, disordered regions and
      transmembrane domains
    - protein statistics: weight, pI, charge
    - amino acid composition

  training_data_for_ML_and_AI:
    -