Index of /monthly_releases/2026/pombase-2026-02-01/gene_ontology

 Name                                          Last modified      Size  Description
 Parent Directory                                                   -   
 cc_go_slim_terms.tsv                          2026-02-01 01:00  909   
 bp_go_slim_terms.tsv                          2026-02-01 01:00  2.4K  
 mf_go_slim_terms.tsv                          2026-02-01 01:00  3.0K  
 gene_ontology_annotation.gaf.parquet          2026-02-01 01:00  603K  
 gene_product_information_taxonid_4896.tsv     2026-02-01 01:00  3.3M  
 gene_product_annotation_data_taxonid_4896.tsv 2026-02-01 01:00  7.4M  
 gene_ontology_annotation.gaf.tsv              2026-02-01 01:00  8.4M  

This directory contains files related to the gene ontology (GO) annotations curated by PomBase:

Three files listing the GO slim identifiers and term names used in PomBase:
   - mf_go_slim_terms.tsv for GO molecular function slim terms
   - bp_go_slim_terms.tsv for GO biological process slim terms
   - cc_go_slim_terms.tsv for GO cellular component slim terms

  "slims" are subsets of an ontology that provide a broad overview of
  annotation distribution.

A containing all GO annotations from PomBase and other sources (Gene
Ontology Consortium, InterPro, and UniProtKB) in GO Annotation File
(GAF) format. See the Gene Ontology site for details of the format:
https://geneontology.org/docs/go-annotation-file-gaf-format-2.2/
This file includes annotations made by manual literature
curation, inferred from orthology and computational annotations:
   - gene_ontology_annotation.gaf.tsv
   - gene_ontology_annotation.gaf.parquet
     (the same annotation in Parquet format)

gene_product_annotation_data_taxonid_4896.tsv:
   A GPAD formatted file of GO annotation for Gene Ontology database
   See https://github.com/geneontology/go-annotation/blob/master/specs/gpad-gpi-2-0.md
   for more about GPAD and GPI files

gene_product_information_taxonid_4896.tsv:
   GPI data for the GO database

These files are part of PomBase release 2026-02-01

For use of this dataset please cite:
  Pascal Carme, Kim Rutherford, Jürg Bähler, Juan Mata, Valerie Wood
  PomBase in 2026: Expanding Knowledge, Modelling Connections
  Genetics, January 2026
  https://doi.org/10.1093/genetics/iyag001
and the Gene Ontology Consortium:
  https://geneontology.org/docs/go-citation-policy/