Index of /monthly_releases/2025/pombase-2025-12-01/training_data_for_ML_and_AI

 Name                                       Last modified      Size  Description
 Parent Directory                                                -   
 alleles.tsv                                2025-12-01 01:00  1.2M  
 canto_fypo_annotations_with_comments.tsv   2025-12-01 01:00   31M  
 canto_go_annotations_with_comments.tsv     2025-12-01 01:00  5.5M  
 canto_publication_classification.tsv       2025-12-01 01:00  616K  
 curated_publications.tsv                   2025-12-01 01:00  584K  
 publications_with_annotations.txt          2025-12-01 01:00   77K  

This directory contains files compiling data destined to train
Language Models and Artificial Intelligence models for curation
purposes.

 - alleles.tsv
   Information about curated alleles:
    - gene_systematic_id
    - gene_name
    - allele_current_internal_id - the internal PomBase ID for the allele,
                                   which changes each release
    - allele_name
    - allele_type
    - allele_description
    - allele_synonyms
   See this recent PomBase publication for details about allele
   nomenclature:
     https://doi.org/10.1093/genetics/iyad143

 - canto_publication_classification.tsv
   A TSV file of PubMed ID vs Canto publication triage status

 - canto_go_annotations_with_comments.tsv
   Manual GO annotations with comments, GAF 2.2 TSV format with a
   "comments" column

 - canto_fypo_annotations_with_comments.tsv
   Manual haploid single locus phenotype annotations with comments,
   PHAF TSV format with a "comments" column

 - curated_publications.tsv
   PubMed ID and title of publications that have been curated by PomBase

 - publications_with_annotations.txt is a list of the PubMed
   identifiers (PMID) of all publications with annotations in PomBase.

These files are part of PomBase release 2025-12-01

For use of this dataset please cite:
  Kim Rutherford, Manuel Lera-Ramírez, Valerie Wood
  PomBase: a Global Core Biodata Resource - growth, collaboration, and sustainability
  Genetics, February 2024
  https://doi.org/10.1093/genetics/iyae007