Index of /monthly_releases/2025/pombase-2025-04-01/phenotypes_and_genotypes

 Name                                       Last modified      Size  Description
 Parent Directory                                                -   
 alleles.tsv                                2025-04-01 02:00  1.2M  
 fypo_slim_ids_and_names.tsv                2025-04-01 02:00  1.3K  
 gene_viability.tsv                         2025-04-01 02:00  255K  
 increased_resistance_to_chemical.tsv       2025-04-01 02:00  1.9M  
 increased_sensitivity_to_chemical.tsv      2025-04-01 02:00  2.7M  
 pombase_phenotype_annotation.eco.phaf.tsv  2025-04-01 02:00   30M  
 pombase_phenotype_annotation.phaf.tsv      2025-04-01 02:00   32M  

This directory contains various files that relate to genotype and phenotype
annotations curated by PomBase:

- alleles.tsv contains a table of all unique single-locus alleles currently
  reported in PomBase, their types and descriptions

- fypo_slim_ids_and_names.tsv is a table of all the fission yeast phenotype slim
  terms names and identifiers from the FYPO ontology
  (see https://www.pombase.org/browse-curation/fypo-slim for more details)

- gene_viability.tsv is a table reporting the current viability status of
  all S. pombe genes. The file has two columns: the gene systematic identifier
  and one of four values: "viable", "inviable", "condition-dependent" or "unknown"

- increased_resistance_to_chemical.tsv is a table of all single locus alleles
  with annotations to any "increased resistance to chemical" FYPO term
  (https://www.pombase.org/term/FYPO:0002682) in PomBase

- increased_sensitivity_to_chemical.tsv is a table of all single locus alleles
  with annotations to any "increased sensitivity to chemical" FYPO term
  (https://www.pombase.org/term/FYPO:0002683) in PomBase

- pombase_phenotype_annotation.eco.phaf.tsv is a comprehensive table
  of the single-allele phenotype annotations recorded in PomBase, in
  PHAT format, as described here:
  https://www.pombase.org/documentation/phenotype-data-bulk-upload-format
  This file uses the Evidence & Conclusion Ontology (ECO) evidence
  code identifiers from https://evidenceontology.org in the "Evidence"
  column

- pombase_phenotype_annotation.phaf.tsv is a comprehensive table of
  the single-allele phenotype annotations recorded in PomBase, in PHAF
  format, as described here
  https://www.pombase.org/documentation/phenotype-data-bulk-upload-format
  This file uses human readable labels for evidence code (as used in
  the Canto curation tool) in the "Evidence" column

These files are part of PomBase release 2025-04-01


For use of this dataset please cite:
  Kim Rutherford, Manuel Lera-Ramírez, Valerie Wood
  PomBase: a Global Core Biodata Resource - growth, collaboration, and sustainability
  Genetics, February 2024
  https://doi.org/10.1093/genetics/iyae007