Index of /monthly_releases/2025/pombase-2025-04-01/gene_ontology

 Name                                          Last modified      Size  Description
 Parent Directory                                                   -   
 bp_go_slim_terms.tsv                          2025-04-01 02:00  2.3K  
 cc_go_slim_terms.tsv                          2025-04-01 02:00  909   
 gene_ontology_annotation.gaf.tsv              2025-04-01 02:00  8.5M  
 gene_product_annotation_data_taxonid_4896.tsv 2025-04-01 02:00  7.5M  
 gene_product_information_taxonid_4896.tsv     2025-04-01 02:00  3.0M  
 mf_go_slim_terms.tsv                          2025-04-01 02:00  3.0K  

This directory contains files related to the gene ontology (GO) annotations curated by PomBase:

Three files listing the GO slim identifiers and term names used in PomBase:
   - mf_go_slim_terms.tsv for GO molecular function slim terms
   - bp_go_slim_terms.tsv for GO biological process slim terms
   - cc_go_slim_terms.tsv for GO cellular component slim terms

  "slims" are subsets of an ontology that provide a broad overview of
  annotation distribution.

A containing all GO annotations from PomBase and other sources (Gene
Ontology Consortium, InterPro, and UniProtKB) in GO Annotation File
(GAF) format. See the Gene Ontology site for details of the format:
https://geneontology.org/docs/go-annotation-file-gaf-format-2.2/
This file includes annotations made by manual literature
curation, inferred from orthology and computational annotations:
   - gene_ontology_annotation.gaf.tsv

gene_product_annotation_data_taxonid_4896.tsv:
   A GPAD formatted file of GO annotation for Gene Ontology database
   See https://github.com/geneontology/go-annotation/blob/master/specs/gpad-gpi-2-0.md
   for more about GPAD and GPI files

gene_product_information_taxonid_4896.tsv:
   GPI data for the GO database

These files are part of PomBase release 2025-04-01

For use of this dataset please cite:
  Kim Rutherford, Manuel Lera-Ramírez, Valerie Wood
  PomBase: a Global Core Biodata Resource - growth, collaboration, and sustainability
  Genetics, February 2024
  https://doi.org/10.1093/genetics/iyae007
and the Gene Ontology Consortium:
  https://geneontology.org/docs/go-citation-policy/