Index of /monthly_releases/2025/pombase-2025-02-01/imported_curated_datasets

 Name                                       Last modified      Size  Description
 Parent Directory                                                -   
 interactions/                              2025-02-01 01:00    -   
 modification_files/                        2025-02-01 01:00    -   
 phaf_files/                                2025-02-01 01:00    -   
 protein_structure/                         2025-02-01 01:00    -   
 qualitative_gene_expression_data/          2025-02-01 01:00    -   
 quantitative_gene_expression_data/         2025-02-01 01:00    -   

These directories contain datasets that have been curated and
formatted by PomBase for loading into the main curation database.

- interactions
high-throughput genetic and physical interaction datasets in 
the BioGRID TAB 2 format described here : 
https://wiki.thebiogrid.org/doku.php/biogrid_tab_version_2.0

- modification_files
high-throughput protein modification datasets in the PomBase
modification data bulk upload format described here :
https://www.pombase.org/documentation/modification-data-bulk-upload-format

- phaf_files
high-throughput phenotype annotation files in the PomBase
phenotype data bulk upload format described here : 
https://www.pombase.org/documentation/phenotype-data-bulk-upload-format

- protein_structure
mappings of protein structure data from PDBe to systematic gene identifiers 
for S. pombe and S. japonicus.

-qualitative_gene_expression_data
high-throughput qualitative gene expression datasets in the PomBase
qualitative gene expression bulk upload file format described here :
https://www.pombase.org/documentation/qualitative-gene-expression-data-bulk-upload-format

-quantitative_gene_expression_data
high-throughput quantitative gene expression datasets in the PomBase
quantitative gene expression bulk upload file format described here :
https://www.pombase.org/documentation/quantitative-gene-expression-data-bulk-upload-format

These files are part of PomBase release 2025-02-01

If using a specific dataset, please cite the original source.

For bulk downloads please cite:
  Kim Rutherford, Manuel Lera-Ramírez, Valerie Wood
  PomBase: a Global Core Biodata Resource - growth, collaboration, and sustainability
  Genetics, February 2024
  https://doi.org/10.1093/genetics/iyae007