Index of /monthly_releases/2025/pombase-2025-02-01/genome_sequence_and_features
Name Last modified Size Description
Parent Directory -
artemis_contigs/ 2025-02-01 01:00 -
fasta_format/ 2025-02-01 01:00 -
feature_coordinates/ 2025-02-01 01:00 -
gff_format/ 2025-02-01 01:00 -
These directories contain sequences for genes, transcripts, proteins
and whole chromosomes along with feature coordinates in several
formats.
- artemis_contigs
chromosome sequence and features in enriched EMBL-based format for
loading into Artemis, annotated by PomBase
- fasta_format
files in fasta format for: chromosome, gene, exon, intron,
transcript and protein sequences
- feature_coordinates
per chromosome files in Tab Separated Values (TSV) format
containing coding sequence (CDS), gene and exon locations
- gff_format
gene features files in GFF3 format for each chromosome, and separates files
for forward and reverse strand features
These files are part of PomBase release 2025-02-01
For use of this dataset please cite:
Kim Rutherford, Manuel Lera-RamÃrez, Valerie Wood
PomBase: a Global Core Biodata Resource - growth, collaboration, and sustainability
Genetics, February 2024
https://doi.org/10.1093/genetics/iyae007