Index of /monthly_releases/2025/pombase-2025-02-01

 Name                                 Last modified      Size  Description
 Parent Directory                                          -   
 PomBase_release_notes_2025-02-01.txt 2025-02-01 01:00  2.1K  
 chado_database/                      2025-02-01 01:00    -   
 curated_orthologs/                   2025-02-01 01:00    -   
 exports_for_external_resources/      2025-02-01 01:00    -   
 gene_expression/                     2025-02-01 01:00    -   
 gene_names_and_identifiers/          2025-02-01 01:00    -   
 gene_ontology/                       2025-02-01 01:00    -   
 genome_sequence_and_features/        2025-02-01 01:00    -   
 human_disease_annotation/            2025-02-01 01:00    -   
 imported_curated_datasets/           2025-02-01 01:00    -   
 macromolecular_complexes/            2025-02-01 01:00    -   
 phenotypes_and_genotypes/            2025-02-01 01:00    -   
 protein_features/                    2025-02-01 01:00    -   
 training_data_for_ML_and_AI/         2025-02-01 01:00    -   

This directory contains data from the monthly release of PomBase for 2025-02-01.

PomBase is a comprehensive knowledgebase for the fission yeast
Schizosaccharomyces pombe, providing literature curation, analysis tools, genome
annotation and access to large-scale data sets.

Website: https://www.pombase.org

For help with any of these datasets please contact the PomBase helpdesk:
helpdesk@pombase.org

Please cite any use of this data:
  Kim Rutherford, Manuel Lera-Ramírez, Valerie Wood
  PomBase: a Global Core Biodata Resource - growth, collaboration, and sustainability
  Genetics, February 2024
  https://doi.org/10.1093/genetics/iyae007


Contents of this release:

  chado_database:
    - PostgreSQL database dumps in Chado (http://gmod.org/wiki/Chado) format

  curated_orthologs:
    - curated ortholog sets for pombe-human, pombe-cerevisiae and
      pombe-japonicus

  exports_for_external_resources:
    - files generated for the import into other databases and resources

  gene_expression:
    - high-throughput quantitative gene expression data

  gene_names_and_identifiers:
    - PomBase gene identifiers, names, gene products, feature types,
      UniProt ID mapping

  gene_ontology:
    - Gene Ontology annotations
    - GO slim terms

  genome_sequence_and_features:
    - genome, gene and protein sequence data (FASTA format)
    - gene, exon, intron and cds coordinates
    - GFF and EMBL format files

  human_disease_annotation:
    - pombe disease associations using the MONDO ontology

  imported_curated_datasets:
    - datasets that have been curated and formatted by PomBase for
      loading into the main curation database

  macromolecular_complexes:
    - pombe annotation for macromolecular complexes

  phenotypes_and_genotypes:
    - alleles, viability data, phenotype annotation

  protein_features:
    - protein modifications
    - protein families and domains, disordered regions and
      transmembrane domains
    - protein statistics: weight, pI, charge
    - amino acid composition

  training_data_for_ML_and_AI:
    - datasets destined to train Language Models and Artificial Intelligence
      models for curation purposes.