no SO type for mRNA - skipping
  failed to create ortholog relation from SPAC977.14c to YPL088W: no db with name: TreeFam at /home/kmr44/git/pombase-chado/lib/PomBase/Role/XrefStorer.pm line 79.
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for sumoylated lysine (PSI-MOD)
no db_xref for isoprenylated residue (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for biotinylated residue (PSI-MOD)
no db_xref for palmitoylated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for palmitoylated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for neddylated lysine (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for stress-activated protein kinase signaling pathway (biological_process)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for sumoylated lysine (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for sumoylated lysine (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for geranylgeranylated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for methylated residue (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for methylated residue (PSI-MOD)
can't find feature for: MEI4
ortholog (MEI4) not found
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
can't find feature for: SGD:S000029663
ortholog (SGD:S000029663) not found
can't find feature for: SGD:S000029664
ortholog (SGD:S000029664) not found
can't find feature for: SGD:S000029665
ortholog (SGD:S000029665) not found
can't find feature for: SGD:S000029662
ortholog (SGD:S000029662) not found
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no SO type for mRNA - skipping
no SO type for mRNA - skipping
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for farnesylated residue (PSI-MOD)
no db_xref for palmitoylated residue (PSI-MOD)
ID in EMBL file (GO:0007243) doesn't match ID in Chado (GO:0035556) for EMBL term name intracellular signal transduction   (Chado term name: intracellular signal transduction)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for methylated residue (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for methylated residue (PSI-MOD)
can't find feature for: UBF1
ortholog (UBF1) not found
no db_xref for acetylated residue (PSI-MOD)
no db_xref for biotinylated residue (PSI-MOD)
no db_xref for sumoylated lysine (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for hypusine (PSI-MOD)
no db_xref for N6-lipoyl-L-lysine (PSI-MOD)
no db_xref for N6-lipoyl-L-lysine (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for methylated residue (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for methylated residue (PSI-MOD)
no db_xref for acetylated residue (PSI-MOD)
no db_xref for N-glycyl-1-(phosphatidyl)ethanolamine (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for N6-lipoyl-L-lysine (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for N6-lipoyl-L-lysine (PSI-MOD)
no db_xref for ubiquitinylated lysine (PSI-MOD)
no db_xref for glycosylphosphatidylinositolated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no db_xref for glycosylated residue (PSI-MOD)
no SO type for source - skipping
no SO type for source - skipping