can't find new term for dephosphorylated in mapping for PSI-MOD
can't find new term for dephosphorylated in mapping for PSI-MOD
can't find feature for: SLCA33
ortholog (SLCA33) not found
can't find feature for: SLCA35
ortholog (SLCA35) not found
allele "aur1R" is not in the form "name(description)" - storing as "aur1R(unknown)"
allele "vas1-1" is not in the form "name(description)" - storing as "vas1-1(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0032974 EMBL file: amino acid export from vacuole  Chado name for ID: amino acid transmembrane export from vacuole
allele "rad31-1" is not in the form "name(description)" - storing as "rad31-1(unknown)"
allele "cut23-194" is not in the form "name(description)" - storing as "cut23-194(unknown)"
allele "cut23-PD26" is not in the form "name(description)" - storing as "cut23-PD26(unknown)"
allele "vas2-1" is not in the form "name(description)" - storing as "vas2-1(unknown)"
allele "vas2-1" is not in the form "name(description)" - storing as "vas2-1(unknown)"
allele "cyj150" is not in the form "name(description)" - storing as "cyj150(unknown)"
allele "Scm3-6|Scm3-19" is not in the form "name(description)" - storing as "Scm3-6|Scm3-19(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0032974 EMBL file: amino acid export from vacuole  Chado name for ID: amino acid transmembrane export from vacuole
more than one cvtermsynonym found for apoptosis at /home/kmr44/git/pombase-run/lib/PomBase/Role/CvQuery.pm line 158.
allele "caf3-89" is not in the form "name(description)" - storing as "caf3-89(unknown)"
allele "Lsd-H518" is not in the form "name(description)" - storing as "Lsd-H518(unknown)"
allele "sev4-L5" is not in the form "name(description)" - storing as "sev4-L5(unknown)"
can't find new term for mature peptide sequence is YTPKVPYM in mapping for sequence
allele "non-phosphorylatable on Ser52" is not in the form "name(description)" - storing as "non-phosphorylatable on Ser52(unknown)"
allele "mcl1-1" is not in the form "name(description)" - storing as "mcl1-1(unknown)"
allele "P-ND149|P-ND95|P-ND60" is not in the form "name(description)" - storing as "P-ND149|P-ND95|P-ND60(unknown)"
allele "P-ND149|P-ND95|P-ND60" is not in the form "name(description)" - storing as "P-ND149|P-ND95|P-ND60(unknown)"
"with" identifier "UniProtKB:" is not in the form db:accession
allele "cgs1-1" is not in the form "name(description)" - storing as "cgs1-1(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0000160 EMBL file: two-component signal transduction system (phosphorelay)  Chado name for ID: phosphorelay signal transduction system
allele "lid1-26" is not in the form "name(description)" - storing as "lid1-26(unknown)"
allele "cut8-563" is not in the form "name(description)" - storing as "cut8-563(unknown)"
allele "vas3-1" is not in the form "name(description)" - storing as "vas3-1(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0000160 EMBL file: two-component signal transduction system (phosphorelay)  Chado name for ID: phosphorelay signal transduction system
can't find new term for mature peptide sequence is YTPKVPYM in mapping for sequence
can't find feature for: MEI4
ortholog (MEI4) not found
allele "Mia1p-MutNES4" is not in the form "name(description)" - storing as "Mia1p-MutNES4(unknown)"
allele "Mia1p-MutNES4" is not in the form "name(description)" - storing as "Mia1p-MutNES4(unknown)"
allele "edt1-1" is not in the form "name(description)" - storing as "edt1-1(unknown)"
"with" identifier "S000001635" is not in the form db:accession
can't find feature for: FAM48B1
ortholog (FAM48B1) not found
can't find feature for: FAM48B2
ortholog (FAM48B2) not found
can't find feature for: SGD:S000029663
ortholog (SGD:S000029663) not found
can't find feature for: SGD:S000029664
ortholog (SGD:S000029664) not found
can't find feature for: SGD:S000029665
ortholog (SGD:S000029665) not found
can't find feature for: SGD:S000029662
ortholog (SGD:S000029662) not found
"with" identifier "S000002990" is not in the form db:accession
"with" identifier "S000002990" is not in the form db:accession
allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)"
allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)"
allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)"
allele "prp13-1" is not in the form "name(description)" - storing as "prp13-1(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0032975 EMBL file: amino acid import into vacuole  Chado name for ID: amino acid transmembrane import into vacuole
can't find new term for mature peptide sequence is YTPKVPYM in mapping for sequence
allele "uvde_delta" is not in the form "name(description)" - storing as "uvde_delta(unknown)"
allele "it7-235" is not in the form "name(description)" - storing as "it7-235(unknown)"
allele "rad6-165" is not in the form "name(description)" - storing as "rad6-165(unknown)"
allele "wis1-DD" is not in the form "name(description)" - storing as "wis1-DD(unknown)"
"with" identifier "UniProtKB:" is not in the form db:accession
allele "sep9-307" is not in the form "name(description)" - storing as "sep9-307(unknown)"
allele "sep9-307" is not in the form "name(description)" - storing as "sep9-307(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0032975 EMBL file: amino acid import into vacuole  Chado name for ID: amino acid transmembrane import into vacuole
allele "mis3-244" is not in the form "name(description)" - storing as "mis3-244(unknown)"
allele "mis3-244" is not in the form "name(description)" - storing as "mis3-244(unknown)"
allele "mis3-244" is not in the form "name(description)" - storing as "mis3-244(unknown)"
allele "prp1-4|prp1-1" is not in the form "name(description)" - storing as "prp1-4|prp1-1(unknown)"
found cvterm by ID, but name doesn't match any cvterm: GO:0032975 EMBL file: amino acid import into vacuole  Chado name for ID: amino acid transmembrane import into vacuole
allele "med8-del-107-200" is not in the form "name(description)" - storing as "med8-del-107-200(unknown)"
allele "sep15-598" is not in the form "name(description)" - storing as "sep15-598(unknown)"
allele "med8-del-107-200" is not in the form "name(description)" - storing as "med8-del-107-200(unknown)"
allele "med8-del-107-200" is not in the form "name(description)" - storing as "med8-del-107-200(unknown)"
allele "sep15-598" is not in the form "name(description)" - storing as "sep15-598(unknown)"
allele "mcs4-13" is not in the form "name(description)" - storing as "mcs4-13(unknown)"
allele "cdc23()" is not in the form "name(description)" - storing as "cdc23()(unknown)"
allele "ark1-T7" is not in the form "name(description)" - storing as "ark1-T7(unknown)"
  qualifier not in the form "key=value": "fructose transmembrane transporter activity"
allele "dim1-35" is not in the form "name(description)" - storing as "dim1-35(unknown)"
allele "gad2-1" is not in the form "name(description)" - storing as "gad2-1(unknown)"
"with" identifier "UniProtKB:" is not in the form db:accession
found cvterm by ID, but name doesn't match any cvterm: GO:0000160 EMBL file: two-component signal transduction system (phosphorelay)  Chado name for ID: phosphorelay signal transduction system
more than one cvtermsynonym found for apoptosis at /home/kmr44/git/pombase-run/lib/PomBase/Role/CvQuery.pm line 158.
allele "htbK119R" is not in the form "name(description)" - storing as "htbK119R(unknown)"
failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to
in annotation extension for SPCC18B5.01c, can't parse identifier: (GO:0072690
failed to add annotation extension to SPAC17C9.16c <-> RNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC17A2.01 <-> transcription: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC17A2.01 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBPJ4664.06 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=unchanged
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=unchanged
failed to add annotation extension to SPBC1105.02c <-> protein level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC18B11.04 <-> protein level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBPJ4664.06 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBPJ4664.03 <-> mRNA level: annotation extension qualifier on SPBPJ4664.03 not understood: annotation_extension=during(GO:0006995)
failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAPB8E5.03 <-> RNA level: can't find relation cvterm for: in_response_to
in annotation extension for SPCC663.03, can't parse identifier: (GO:0072690
failed to add annotation extension to SPAC17A2.01 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=unchanged
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=unchanged
failed to add annotation extension to SPMTR.01 <-> mRNA level: annotation extension qualifier on SPMTR.01 not understood:  occurs_in=CL:0002675
failed to add annotation extension to SPBC32F12.03c <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC649.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPMTR.02 <-> mRNA level: annotation extension qualifier on SPMTR.02 not understood:  occurs_in=CL:0002675
failed to add annotation extension to SPBPJ4664.06 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC646.09c <-> RNA level: annotation extension qualifier on SPBC646.09c not understood: during()
failed to add annotation extension to SPAC3A12.14 <-> mRNA level: annotation extension qualifier on SPAC3A12.14 not understood:  qualifier=present
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAPB8E5.05 <-> mRNA level: annotation extension qualifier on SPAPB8E5.05 not understood: annotation_extension=during(GO:0006995)
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=unchanged
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC1198.14c <-> transcription: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC17A2.01 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPMTR.01 <-> mRNA level: annotation extension qualifier on SPMTR.01 not understood:  occurs_in=CL:0002675
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=unchanged
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC1105.02c <-> RNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC18B11.04 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPBC17A3.07 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC1D4.11c.1 <-> intracellular signal transduction: Can't call method "name" on an undefined value at /home/kmr44/git/pombase-run/lib/PomBase/Chado/ExtensionProcessor.pm line 204.
failed to add annotation extension to SPMTR.02 <-> mRNA level: annotation extension qualifier on SPMTR.02 not understood:  occurs_in=CL:0002675
failed to add annotation extension to SPBC2A9.04c <-> protein level: annotation extension qualifier on SPBC2A9.04c not understood:  qualifier=present
failed to add annotation extension to SPAC343.12 <-> mRNA level: can't find relation cvterm for: in_response_to
failed to add annotation extension to SPAC513.03 <-> mRNA level: annotation extension qualifier on SPAC513.03 not understood: annotation_extension=during(GO:0006995)