ID   SPBC874    standard; DNA; FUN; 787 BP.
XX
AC   AL135748;
XX
SV   AL135748.1
XX
DT   17-DEC-1999 (Rel. 62, Created)
DT   02-MAY-2002 (Rel. 71, Last updated, Version 2)
XX
DE   S.pombe chromosome II cosmid c874.
XX
KW   ATP-dependent RNA helicase cdc28; cdc28; prp8.
XX
OS   Schizosaccharomyces pombe (fission yeast)
OC   Eukaryota; Fungi; Ascomycota; Schizosaccharomycetes;
OC   Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces.
XX
RN   [1]
RP   1-787
RA   Skelton J., Churcher C.M., McDougall R.C., Rajandream M.A., Barrell B.G.;
RT   ;
RL   Submitted (17-DEC-1999) to the EMBL/GenBank/DDBJ databases.
RL   European Schizosaccharomyces genome sequencing project, Sanger Centre, The
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   barrell@sanger.ac.uk
XX
DR   GOA; Q10752; Q10752.
DR   SWISS-PROT; Q10752; CC28_SCHPO.
XX
CC   Notes:
CC   Details of yeast sequencing at the Sanger Centre are available on
CC   the World Wide Web.
CC   (URL, http://www.sanger.ac.uk/Projects/S_pombe/)
CC   During 1995 to 1996 about 66% of S. pombe chromosome 1 was sequenced
CC   by the Sanger Centre.  The sequencing of the S. pombe genome is now
CC   being continued with funding from The European Commission.
CC   Fourteen European sequencing laboratories, including the Sanger Centre,
CC   are participating in the project.
CC   Protein coding regions (CDS) have been predicted with the help
CC   of computer analysis using the Genefinder program in PomBase
CC   (an ACEDB database) with additional predictions for the
CC   branch-acceptor sites supplied by the program Sp3splice.
CC   CAUTION: It is possible that for any individual CDS we may have
CC   underestimated or overestimated the number of introns/exons or
CC   we may not have chosen the correct splice donor/acceptor sites.
CC   CDS are numbered using the following system eg SPBC25H2.01c.
CC   SP (S. pombe), B (chromosome 2), c25H2 (cosmid name),
CC   .01 (first CDS), c (complementary strand).
CC   The more significant matches with motifs in the PROSITE
CC   database are also included but some of these may be fortuitous.
CC   The length in codons is given for each CDS.
CC   IMPORTANT: This sequence MAY NOT be the entire insert of
CC   the sequenced clone.  It may be shorter because we only
CC   sequence overlapping sections once, or longer, because we
CC   arrange for a small overlap between neighbouring submissions.
CC   Cosmid c874 is overlapped at the 5' end by cosmid c21B10, EMBL
CC   entry SPBC21B10, accession number AL121794. and at the 3' end
CC   by cosmid c19C2, EMBL entry SPBC19C2, accession number AL109731.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..787
FT                   /chromosome="II"
FT                   /db_xref="taxon:4896"
FT                   /organism="Schizosaccharomyces pombe"
FT                   /strain="972h-"
FT                   /clone="cosmid c874"
FT                   /map="IIR"
FT   misc_feature    1..101
FT                   /note="nominal overlap with cosmid SPBC21B10 S. pombe
FT                   chromosome 2"
FT   CDS             <1..>787
FT                   /codon_start=2
FT                   /db_xref="GOA:Q10752"
FT                   /db_xref="SWISS-PROT:Q10752"
FT                   /note="SPBC874.01, len:262"
FT                   /gene="cdc28"
FT                   /gene="prp8"
FT                   /gene="SPBC874.01"
FT                   /gene="SPBC19C2.01"
FT                   /gene="SPBC21B10.01c"
FT                   /product="ATP-dependent RNA helicase; no apparent S.
FT                   cerevisiae ortholog"
FT                   /protein_id="CAB63784.1"
FT                   /translation="FVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPG
FT                   KCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMR
FT                   SLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEA
FT                   SSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLC
FT                   RARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYF"
FT   misc_feature    686..787
FT                   /note="nominal overlap with cosmid SPBC19C2 S. pombe
FT                   chromosome 2"
XX
SQ   Sequence 787 BP; 220 A; 142 C; 170 G; 255 T; 0 other;
     ttttgtgatt gattctggat ttgtcaaaca aaacatgtat aatccaagga ctggtatgga        60
     aagcttagta tctgtgcctt gctcccgtgc ttctgctgat cagcgtgccg gccgtgctgg       120
     tcgagtagga cctggaaagt gcttccgttt atatacgcgt cggacatata acaatgaact       180
     ggatatggta acatctcctg aaattcaaag aacaaatttg acaaatattg ttctcttgct       240
     taaatcccta ggaattaata atcttttaga tttcgacttc atggatgctc caccacctga       300
     aacgttgatg cgttcattag agttattgta tgcgcttggt gccttaaaca atagaggaga       360
     attgactaag ctcggcaggc agatggcaga gtttcctaca gatcctatgc tttctaaatc       420
     tttgattgca tcttcaaagt atggatgtgt tgaagaagtg ttatcaattg tttctatgtt       480
     aggggaggct tcctctttat tctatagacc aaaagacaaa ataatggaag cggataaagc       540
     tagagcgaac tttacccaac ctggtggtga tcatttaact cttcttcata tttggaatga       600
     atgggtagat actgactttt cgtacaattg ggcccgtgaa aactttttac agtataagag       660
     tttatgtcga gctcgagatg ttcgtgatca acttgccaat ctctgtgaac gggtggaaat       720
     tgaattggta actaattctt cagagtccct tgatcctatt aagaaagcta tcacagctgg       780
     ttatttt                                                                 787
//