ID SPAPJ695 standard; DNA; FUN; 10410 BP. XX AC AL132983; XX SV AL132983.1 XX DT 15-NOV-1999 (Rel. 61, Created) DT 14-JAN-2000 (Rel. 62, Last updated, Version 2) XX DE S.pombe chromosome I PCR product p695. XX KW duplicated region; hypothetical protein; TF2 LTR. XX OS Schizosaccharomyces pombe (fission yeast) OC Eukaryota; Fungi; Ascomycota; Schizosaccharomycetes; OC Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-10410 RA Oliver K., Harris D., McDougall R.C., Rajandream M.A., Barrell B.G.; RT ; RL Submitted (11-NOV-1999) to the EMBL/GenBank/DDBJ databases. RL European Schizosaccharomyces genome sequencing project, Sanger Centre, The RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL barrell@sanger.ac.uk XX DR SPTREMBL; Q9URW1; Q9URW1. XX CC Notes: CC Details of yeast sequencing at the Sanger Centre are available on CC the World Wide Web. CC (URL, http://www.sanger.ac.uk/Projects/S_pombe/) CC During 1995 to 1996 about 66% of S. pombe chromosome 1 was sequenced CC by the Sanger Centre. The sequencing of the S. pombe genome is now CC being continued with funding from The European Commission. CC Fourteen European sequencing laboratories, including the Sanger Centre, CC are participating in the project. CC Protein coding regions (CDS) have been predicted with the help CC of computer analysis using the Genefinder program in PomBase CC (an ACEDB database) with additional predictions for the CC branch-acceptor sites supplied by the program Sp3splice. CC CAUTION: It is possible that for any individual CDS we may have CC underestimated or overestimated the number of introns/exons or CC we may not have chosen the correct splice donor/acceptor sites. CC CDS are numbered using the following system eg SPBC25H2.01c. CC SP (S. pombe), B (chromosome 2), c25H2 (cosmid name), CC .01 (first CDS), c (complementary strand). CC The more significant matches with motifs in the PROSITE CC database are also included but some of these may be fortuitous. CC The length in codons is given for each CDS. CC IMPORTANT: This sequence MAY NOT be the entire insert of CC the sequenced clone. It may be shorter because we only CC sequence overlapping sections once, or longer, because we CC arrange for a small overlap between neighbouring submissions. CC PCR product J695 is overlapped at the 5' end by cosmid c1F8, CC EMBL entry SPAC1F8, accession number Z81312. XX FH Key Location/Qualifiers FH FT source 1..10410 FT /chromosome="I" FT /db_xref="taxon:4896" FT /organism="Schizosaccharomyces pombe" FT /strain="972h-" FT /map="IL" FT misc_feature 1869..1939 FT /note="Small duplicated region as identified by independent FT cDNAs AU009231 cDNA, clone and spc04643 AU009540, clone FT spc05042, also shows 78/95 (82%)conservation between FT SPAC4F8 Z98530 S.pombe chromosome I cosmid c4F8, and 84/95 FT (88%) conservation between MISPLSUR X06597 Fission yeast FT mtDNA for LSU rRNA gene" FT LTR complement(3234..3502) FT /note="TF2 type LTR fragment" FT LTR 3470..3807 FT /note="TF2 type LTR fragment" FT CDS complement(7103..7456) FT /db_xref="SPTREMBL:Q9URW1" FT /label=SPAPJ695.01c FT /note="SPAPJ695.01c, len:117, SIMILARITY:Schizosaccharomyce FT s pombe, CAB42063, hypothetical 12.8 kd protein., (113 aa), FT fasta scores: opt: 506, E():7.7e-29, (67.3% identity in 113 FT aa)" FT /product="hypothetical protein." FT /gene="SPAPJ695.01c" FT /protein_id="CAB61210.1" FT /translation="MLLLLYICCLFLKFILANVDLTFVEYAKLPSKYAELLANATNQQG FT VMLFSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSDDKPETFN FT SSIHLLNSDLDPK" FT misc_feature 9068..9153 FT /note="Small duplicated region as marked by 2 independent FT cDNAs AU010317 clone spc05710 and AU007551 clone spc02188, FT also hits 4376 4461 MISPCG X54421 S. pombe complete FT mitochondrial genome and MISPRNS X15738 Fission yeast FT mitDNA for small ribosomal RNA" FT misc_feature 10307..10410 FT /note="nominal overlap with cosmid SPAC1F8 EM:Z81312 S. FT pombe chromosome 1" XX SQ Sequence 10410 BP; 3577 A; 1565 C; 1554 G; 3714 T; 0 other; gaaaacgctt gtttaatttg gctccagtat tgtcagtttt ctgaaaaaaa aagctcgctt 60 tgcctcggcg gtctatttgt aacgattata cttctatcag atctattaat cctaactaca 120 acttgaaatg atttcttaag cgcgtgaaat aaaaaaatct caactctgag aaaccgcaat 180 acttacttgg gatttctttt tgtgtacatt ttacttctgc ttatagcgtt gagagtaact 240 tggtaagctc tgagcagatt ctacaacatt tatgactaaa atggctgtct ttcaattaga 300 tattttgagc ggagcaagca tgaagctgct atcaaaatat aatatccata aaatcattta 360 cgaatgaaat aatacattct tttcaaccac acgtaaaaaa atctttaaaa ccatgtgcaa 420 ctttagaaat gttctaaatt tcgatgtttc cacaaatgta gacaaaatat tcagtcccac 480 atttgcgtta gattttacta taaattacgc ctccttactc aataactgtt tttactttgg 540 gtcgatgagt ctggacttgg tctaaaaata cggcccctca accgaacatt tatttgaccg 600 gcaaatatta aagaaaggag acgaagtatt tcgaaaatac atcaactcac atttaagata 660 ggatgctgca tgcaatggaa agaagaaaaa aaggggctgc tttctgtaag ttgtattttc 720 taacaattct agtgcatatt ccatgaaatg tattgtgtta ttaacggcac aatttattag 780 tttattaata atatattaaa aaaataggat aactgaaaaa gatattcctg ataatataat 840 gatccagtgc aagtacagtt tgagcattga atattcatat caatgttcat aaaataagaa 900 tatgcggtat acaatgaaat gatagttgag ttattactta agaagagttc ggttgaaatt 960 ttcaaaaaaa tagcagtcaa gaaaatttca agaagaagaa agaaacattt atatatatac 1020 atagtttaat ccatttagat atttctgctt agtacgaata tcgaattttt attcatgaaa 1080 aatactctgg aataagatga tttgtatttc gaatgtaaaa gagcagtcca aaaaaggcgc 1140 acatacacat aataaagtaa gttatagaag tgtgtatatg taaaacaaca caataattta 1200 ttttcattaa gaaaaaccac tacagttttt ttatagtgat tttactattt aaatagcaat 1260 cttgacagta atgatttgtt tcgaaattat ttatgaaaag agatagtgcg gtagtagtat 1320 gtgaaagcag ttagaaaaca atggttagac ttctctaagc acgtcaagta aataacaaaa 1380 aatacggacc tttccttgag aattttataa atgacgtttt atcagttcta gatttttacg 1440 atatagtgct ttaaatgttg tttggtatct tttttctttg atatacgcaa atctctagac 1500 gtatcaataa gtaaaattgt gagaagttta ctacgtaaat tactttaccg attttatgaa 1560 gttcagcacc ggatatttgt atttgaacat tagaaaaagg acattttgtt cagaaggaga 1620 gatgtcaaaa tcgaatttta aaatattata atttgctcac attcatttgt caatagattc 1680 cgaaaaacgc gaaaaatttg cattataatc taaatacaac acttttgaaa tatttacatc 1740 cgattcaaaa tgaagtattt aaacgcgaga gatttgcttg aattatctaa tcatgaatat 1800 atgatttata aagaaaaact tatcgatttt atttttatca tagtttattt ctgttgaatc 1860 agattactgg acagccaaat tgagcaaatt aaaaactgaa agcatctcaa gtttgaaatt 1920 tcttaaagaa acttatctta agaaagtagg aaactttcca atatacacct ttatgtattt 1980 taatatgaca ataatgacaa atagaaatct ttttctattc atggcgatca ttatttttgt 2040 aaattcgtga acctttttta tgtgttttgc ttttgaagtt ggtcttctga tcgctgatgt 2100 tgcaccagtt caacattgta agtattaatt ctacaggaat tagtaagcga tttttgactt 2160 ttgcttaagc atcggctgaa tagttgtttc accgaatttt ggagcatctc cttccattag 2220 gccaaaatga cacttatttc cgcaatttct tttttgtaac tgaaatctct tcatttaata 2280 ctaacaagaa aattaagtgc aacattttaa caattccatt ttggtatctc atatcagaaa 2340 agagtaaaat attatttctc tgtacacttt tgttgtggtg cgagtgactc tgaattgatg 2400 atgtgtatta ataattctct taggtttttt tattttgaaa attttatagt tttgttccac 2460 ttcgtcctaa cgatttcgta tattttattt acaatcaaaa agccaatcca atttttatgt 2520 ttcaagatac agtaatttct gagttctaaa caaaaaaaat ttctcagaag ataaacaaaa 2580 gtaatgatat gtaaatgtga ataaaatata agtgactttt aaaaacatag caaactaaaa 2640 gatcaaagga acttaacgga aaaggttaaa aaataaaatt ttccgtttta tttctcgtat 2700 catattgtaa agtttacgat aattaatcat ttacagccct gtattaaaca cctataaata 2760 tttcttcaaa cctgctgagt agataaggtt taaagtccga taaatgcata tatgttcatt 2820 gcattcggac caaattcaaa ctagttggta taataacaat ggattggcat attactgcta 2880 gacaaaaata aaataaaata aataacgatc gtgaaaataa atatttttaa tttcatagca 2940 agagagaaac acgtaaaaca agtataatta aataagtgta aagaacattt tctttgttgt 3000 gcttaaaatt ttgtaattat aaatccaaga gtttacaaat ttcgttgacg cttactttaa 3060 ttcaattact aaaatcaatt ttaaacaaaa taatacaaaa ttaagaacaa aatttcccaa 3120 tttacaattt tgactcgttt agcaatacat tactgataga attcattttc tcttcactaa 3180 gttgtcagct acgtgcagtt tgatatattt ttaaacgaca cattgaattg caaagagtat 3240 ctcatgtgat ctacgaaata gcggtatgta taaataaatg tttattatta ttataagaag 3300 tccagtagta tcggtcacct tatagctaat tactgaacta tagaatcagg ttcagttata 3360 attctattta taatattgca aataattgac tgattatcaa taagatctat ctcaatatcg 3420 tatcatctat atggtacgat gtgtaattag gacatgtgac atatagtgat cctcaatgtt 3480 agtattgctg acatatacta gtgcattatg ctactttccg tcgcgtatca ctcgatgtca 3540 tatcttagaa actagttaaa tccttctatg catacttccg gataactgcg tttatgtgca 3600 taaataccca tcattaagtg ctattagaaa gaacgcaatt tgaatctcgt ttagttataa 3660 tctatttcat tggtaggtac agcataattc atatttgaga atatccataa caagttgcta 3720 cttgtattac ttgcattttg aaatataata gcaaaaacac ttaccgtagt tctaagaata 3780 tctcaaacag agaacatact gtgtagcacg aactatttga atattcaact tatataaacg 3840 attttcttta aaaaaatagc acacacgcat agtatcaatt tttgcgcgaa acaaatttac 3900 ttgcttaaga attatcactt atatacgtca agtatgtcaa acaaattaga tttacaaatt 3960 attcatctac tgaatagtcc aatttgcaaa aaaaaattaa gatttccgaa tcaacttttt 4020 ttttttgttg taattaggat gattttccag aaatatatct gtgtagtcaa aatgtattaa 4080 tacaagctga catcataact tttatatgtt aaactgaaat gaaagcaatc ccgtcaagac 4140 ttccgcaaat attagatatc agttgatgac aaattaattg ccagaaaggt atgataaata 4200 ctaaacaccg gtattattcc tcaagcgtat attactcgtt tggatgaaag gttataggtt 4260 taaagacatt caatcaactt ttaaccaccc attattttcc acattttcag tctttgaaat 4320 acatttttgt tatcaattaa gctagaaatg ctcgacgttc ttattgcaag ttctatacat 4380 tacgctgagt aaaataaatc tcctgtcatg ctagccgctg caaaatgagt gataaaaatt 4440 tatcagctga accatcctgg tttgtcgtag agcattttat aaaataaaat ttgcagaatt 4500 ccatattttt aaaatattga tagtaaaaaa ccagctgttc aatgattaaa ttctggtaat 4560 aactttgccg catatgtgtg caacaaacgt aagttttttc aaataccatg agcttaaata 4620 gccttcagta aaaataaata aaattatatc atttgcaact tttgtcatta atacgtttca 4680 tttttttagt ttcgtatcag agcattaacc ccatcataat tcagatataa aaattgctca 4740 atcattatct caagggggtc acactaaaaa ataaaaaagc gtccaacaaa ttatgatttt 4800 ggaacttaat tgcttaaaaa tccaaaatat aacttgaaaa ttgaacagta attctcaacc 4860 aagactctcg taagtagtga ttggtttcaa gcacaatttt gatgcaagat tgttggaggc 4920 tataaattat cagcgacgag ttttgcatat cttgactgta cggcccataa gagcgtaact 4980 taagtagtaa ttaagctcag ttcctttcaa cgtattaagt ttctaacaat aacgttgttg 5040 aggtttatca ttttgtctct cgttaacatc gttatgaaaa atgccttcct taaatattat 5100 gtgcgtataa aatttaaaag cttgtaactg ttaaagtact cgcgatttga aaaataataa 5160 tttcagtact tgtggttttg caagtccaca ttaataaatg ttttttaaga gtcgaaaaag 5220 tctcaacttc gtttttctat ttgatccgct tgatcaattc gattttggac gtcccttagt 5280 aaatttccta ccaccatgtt gatagtgctc gaagtaaata tgtcgtatcc ttttaattcc 5340 ccttttttta tttcggtcat gcttttggga tattcattag agaactttag caattgattg 5400 cttgtataat atctccgtaa attgaagtcc gacatgatga aggcaataca aaattatata 5460 atcttttgac aatatcgatg cgcaaatagt ataaaagatc agcaattatt cgagttttta 5520 tgctatacac atgggatcat gctgcttttt atatattcag tttcttatct aaatcggtaa 5580 tataaaaata ttgcgctaac gagcactttc ccttcaggga tacctgctac aatttgtagg 5640 ccaataaaat tatcatttgt acttgaatca gtgatgtgaa actgaagatc taaataaaga 5700 agaaggaagc gataaaaatc gtttcaacat acgtttgaaa aaattcttct ttggaactat 5760 ttgtgttgat caaaagaaat tgcaaagcca cacacaaaaa cctatttagt gattgtcgat 5820 atactattcc cttccgtttt agcaaagcgg aataaaaact caggtaggct aatgatacgg 5880 aatatgcatt tcttaatgaa taaggggaac ctaaaatcgt cagagttcaa gtatgtgaca 5940 ttatcagttt aaatgtataa cgaaagcatt taattttaat catgtactcc taaaaatgat 6000 ttttaaaaca tgattaattg aaataccaac caagaagata ctaaataaat ataagtgtca 6060 atctgttgtg gttagctttt ttcaaatatt tattaattag cgaactgcat cgttttttat 6120 tagcgagtaa gcttgaatgt tggttctcgg tatacaagaa ggttaatatg tcattaaaag 6180 tcacccagga tacccgtccc gctcttgtgg ggcacttatt ataagtattc taaatgctga 6240 agtaacagcg cttcttattt tgcaactttc ctttctgaat acccattgtt attcaaataa 6300 atatcttctg tgaattgagg tttttctgaa aggatgtggt aagtctattg ttcaatgata 6360 aaagggttgt ttgcgcagtt gtgatgatcg cgtacaactc agggatgatt ttgaaaatga 6420 ttcgactccc gcaatatttc gttattgcga tcacgacttg agagataata tcttagttgg 6480 tttgtattat ttatttattt ataatatagt ttactaatat agtttccaat cgttcgtttc 6540 tcaggattat ttgtccattc agctttagca gtgacgatca aagattctga cctcaaaaca 6600 tatatacctt tttgaaattt tgcttgttta aaaatggtga gaagtttttt caaataatat 6660 tgaatgatac agatcggcag aatggtaaaa tcatgcaata aacgtatata tttcatctat 6720 gtgattattt ttgaaattga tttacctatt ttttgaattc tatagaaccc gtacggaaat 6780 ggtttatata tggtacgcat gatgcccaaa tcaaagcttt ttcagttcct taaataacgt 6840 ttatttgcca gtaaacttcc ttatttgagg gaaatgcgaa cagaaatctc gtagacttat 6900 tgcattttct attcgatatg acttgggttt tgttgggatc taccgctaat gatgttttat 6960 tttatcgatt tgctgattag gcagattagg aaaattaata aaaaaccaaa gctgataaac 7020 gtcagtttta ccttgactct cggtatatga tttagcgatt tattaattta ggactaaagt 7080 ttccagctac gctgtttggt gtctatttgg gatccaagtc gctgtttaat aggtgaattg 7140 atgagttgaa agtttcgggc ttgtcatcgc tattggtatc gaatatataa cagtcagtgg 7200 tatactgacc ggttagcagt tgacatagat aagcatcagt atcattattt atttctgtaa 7260 cgttattgac cagataattg taagctccaa ttcgtatatc ccctgtacta aatagcatca 7320 ctccttgctg attagttgca ttagcaagta attcagcata tttagaaggc agcttagcat 7380 actcgacgaa agttaaatca acattagcta aaataaactt cagaaataaa cagcaaatgt 7440 ataaaagcaa taacatgtgg gaaagtgtcg gaatctctta attggtgtaa cttataatga 7500 tttaattcct acaatttgga tcgaaaggat accaatttaa atttacaatg ttgatatcga 7560 taatttgaac agtattgaca caagattcgg ctgggaataa gtcggttatc tccaggagcg 7620 ctagatgtac aaatttcagt tacaatttcc gatcggattt aaagcttcgt taaactgcgc 7680 cagtgagctc agactagtcg tcttacaaca ttgcgaaatg cagataacag gagttaaaag 7740 gatgttttta tatgtaagtg acatgcaatc tttcatttaa tagcttataa ccgaaactga 7800 tgagcaatgt tcaattgaac cctgtttgta gttttcttga catccattat caaccgatat 7860 attcattaaa caaataggat cttgtgatta tgtatgtata aacaggttct atttgttatc 7920 ccaacgcatg acttgtagcg taatataaat taatgtaatg atgccgaatg acaaccatac 7980 ttttaataca gaattcatga gtccgaaact gtattttttt taacaatgat gaactttact 8040 gtaaaatttc aaataaatgt catcatgtcc caatgtacct tgtcgttttt agatgacttt 8100 gttttcacac atcatcgttc ccacctttta tcttataaac ggtgtaacca cccactcgac 8160 tatcctactg ctatttaaaa acttaataat gaacttgaat tagagccttc cagtattctt 8220 ttcataaaat tcagccactc cttttttttt catcatccag cttcatcaat agtctttgat 8280 atgtcctaga aattgttata tacaaatacg atgaattgtt gcaaacgagt ttctttattt 8340 tttccatgta atttgctaca gtcatcatta gaaaccatta ttattattat tatcattttt 8400 aattaacttt caatactgtt tccctatatt attatcaata catattataa acgcgctgca 8460 ttacaactat ttccattata cgtgcaaaaa aaaatattat tcatgttaaa accaaatcag 8520 aaaaaatttt tttgtcattg caagctctac ctttttatat gtgcgctcat tccaatttaa 8580 ttaatttttg ttttaggtca ccttattttg agaatgtata tttttttatt aatgttatta 8640 cacgtgttta ttttcaaatt gaatttacta ctatgtatta tataaaatat atttacactt 8700 tattttatta atatttttct aaacaactta ctagtgacat tgaatgttcc ataggtcgga 8760 gtattggttc catttacaac ttttttagat atttttttaa cgtacatatc attatcgcca 8820 ccttcaattt attacatttt ctctttatat aagtctaact ttataatttt ttttccagtt 8880 cattttctgt cagtggcttt aatcctttta cgtgcttaaa ttcattttct tttgttacat 8940 tatccttatt tattcatatg ttgttttcac actgcttttc atatcttagt ttcgatacta 9000 caatatgctc actatacgta gtatttgatt tatttaaatg aatgattatt ctcttcatat 9060 caaacaggtg gtgaatttta tctctgagat gtactagcta ctcgccaagc gctgaaagta 9120 ttaatctctt gaaggagaca ttcatttgtt tacgtgtgat ctacaaatac atatatatat 9180 atatgagtag caattttata attatagtta taagaagtct aaaagtgaac cgtcactcat 9240 ataggttata agctaactta agaaacgagg atcatttgta ggtttattta taaccttttt 9300 aatccacatc tttaattatc cgtgtaaaca gtcggttagt taactatacg gattagttgg 9360 cagatcttta ctagtattct aacgtttacc aaagcgacaa aaaagttacg gttaagtgat 9420 acaaaagaaa gaaagaacaa gagctttgga agtaaatgct aaaaaaattt taagttaact 9480 atttattgcg ttaaaatagc cctataaaaa ttgtgagact tatttgacta taatgaaaag 9540 atcttgaaga atcataaatt actactcaag catattttgt tgaattatga tagctataag 9600 ctttatttgc tactttatgt ttttttataa attactactc tagaaatatt atatacgaaa 9660 aattgtgact cagttacatt tctctattat tatcatgcca tcaacctaaa ccgctcaaca 9720 aagcagagta cttaatgtca gtacgataga gacatttgct ttttgggagt aatattgata 9780 agtttgctga aaaagagacg gtaatatttc tgttatgatt tctaaaataa gttacatgca 9840 aaggattttt cagcaacaac gtagaggaga agattgagtt aacgtaattc tgtaaactaa 9900 catcgtaaaa tagaaaagaa agtaagcatc caaaagccat ttgtttccct cggaacacac 9960 gacgagttag atttaactta tacactattc gcagtaaaat gtgaagaaaa taaataaatg 10020 cggtagcagg aaaactaaca atatgtttaa tcttgtgtac agttaaaatg ttaaggagtg 10080 cgattcatgt gtaataacta ttaaatcatg tactaatcaa aaattctcaa taaattaaat 10140 gcttggatat ttgaatatct gtattaatat agactttgca gactttaaac cagacaatca 10200 gcttgaatgt cgtttggcta ttagcttcaa tcgagcgttc cttgcctgtt ttttccaaaa 10260 aaaggaattg ttgttaacaa gttacgagtt gcggaagttc atgaatgatc caacttgaaa 10320 aaaaatatac ttctaaattt gcacctttaa ccaaaataaa tatttctttt caaagccttt 10380 ttctttcgcg ttaattggaa atcgtatttt 10410 //