ID SPAC13D1 standard; DNA; FUN; 5586 BP. XX AC AL590903; XX SV AL590903.1 XX DT 24-APR-2001 (Rel. 67, Created) DT 24-APR-2001 (Rel. 67, Last updated, Version 1) XX DE S.pombe chromosome I cosmid c13D1. XX KW retrotransposable element. XX OS Schizosaccharomyces pombe (fission yeast) OC Eukaryota; Fungi; Ascomycota; Schizosaccharomycetes; OC Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces. XX RN [1] RP 1-5586 RA Collins M., Harris D., Wood V., Rajandream M.A., Barrell B.G.; RT ; RL Submitted (24-APR-2001) to the EMBL/GenBank/DDBJ databases. RL European Schizosaccharomyces genome sequencing project, Sanger Centre, The RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL barrell@sanger.ac.uk XX DR GOA; Q9C0R2; Q9C0R2. DR GOA; Q9C119; Q9C119. DR SWISS-PROT; Q9C0R2; RT22_SCHPO. XX CC Notes: CC Details of yeast sequencing at the Sanger Centre are available on CC the World Wide Web. CC (URL, http://www.sanger.ac.uk/Projects/S_pombe/) CC During 1995 to 1996 about 66% of S. pombe chromosome 1 was sequenced CC by the Sanger Centre. The sequencing of the S. pombe genome is now CC being continued with funding from The European Commission. CC Fourteen European sequencing laboratories, including the Sanger Centre, CC are participating in the project. CC Protein coding regions (CDS) have been predicted with the help CC of computer analysis using the Genefinder program in PomBase CC (an ACEDB database) with additional predictions for the CC branch-acceptor sites supplied by the program Sp3splice. CC CAUTION: It is possible that for any individual CDS we may have CC underestimated or overestimated the number of introns/exons or CC we may not have chosen the correct splice donor/acceptor sites. CC CDS are numbered using the following system eg SPBC25H2.01c. CC SP (S. pombe), B (chromosome 2), c25H2 (cosmid name), CC .01 (first CDS), c (complementary strand). CC The more significant matches with motifs in the PROSITE CC database are also included but some of these may be fortuitous. CC The length in codons is given for each CDS. CC IMPORTANT: This sequence MAY NOT be the entire insert of CC the sequenced clone. It may be shorter because we only CC sequence overlapping sections once, or longer, because we CC arrange for a small overlap between neighbouring submissions. CC Cosmid c13D1 is overlapped at the '5' end by pJ691 and at the CC 3' end by cosmid c19D5, CC EMBL entry SPAC19D5, accession number Z99531. XX FH Key Location/Qualifiers FH FT source 1..5586 FT /chromosome="I" FT /db_xref="taxon:4896" FT /organism="Schizosaccharomyces pombe" FT /strain="972h-" FT /clone="cosmid c13D1" FT /map="IR" FT misc_feature 1..101 FT /note="30805 (+1) 1 6161 SPAPJ691 AL133302 S.pombe FT chromosome I PCR product p691." FT misc_feature 1..5586 FT /note="this cosmid may have the incorrect number of FT transposon repeats" FT LTR complement(13..260) FT /note="1231 (-1) 1 248 Tf2-type LTR" FT CDS complement(298..4299) FT /db_xref="GOA:Q9C0R2" FT /db_xref="SWISS-PROT:Q9C0R2" FT /label=tf2-12 FT /gene="tf2-12" FT /gene="SPAC13D1.01c" FT /product="retrotransposable element Tf2-type transposon" FT /protein_id="CAC37430.1" FT /translation="MSYANYRYMKARAKRWRPENLDGIQTSDEHLINLFAKILSKHVPE FT IGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQFAERMFSENGS FT LTWQELLRQTGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILW FT MLPYSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKESLSKKNNT FT TNSRNLRKTNVSRIEYSSNKFLNHTRKRYEMVLQAELPDFKCSIPCLIDTGAQANIITE FT ETVRAHKLPTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAI FT SFTTLYDNNIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKG FT LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKK FT EGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDE FT HKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSES FT EHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ FT PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV FT SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSD FT KEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFN FT FEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTND FT TKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGI FT ELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSM FT DFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII FT ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW FT VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQT FT VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL FT QKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESDIGTILHILEHKN FT REQVLYLNVKYISNLNPSTIMSGWTTLATALQADKAIVNDYIKNNNLNI" FT misc_feature complement(895..1362) FT /note="Match to rve Score 135.52" FT misc_feature complement(2455..2985) FT /note="Match to rvt Score 181.45" FT misc_feature 4149..5586 FT /note="34770 (+1) 1 6954 SPAC19D5 Z99531 S.pombe chromosome FT I cosmid c19D5." FT LTR complement(4479..4821) FT /note="1019 (-1) 12 358 Tf1-type LTR" FT CDS complement(4865..5586) FT /codon_start=3 FT /db_xref="GOA:Q9C0R2" FT /db_xref="GOA:Q9C119" FT /db_xref="SWISS-PROT:Q9C0R2" FT /label=tf2-9 FT /partial FT /gene="tf2-9" FT /gene="SPAC13D1.02c" FT /gene="SPAC19D5.09c" FT /product="retrotransposable element Tf2-type transposon" FT /protein_id="CAC37431.1" FT /translation="LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSP FT ALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLV FT MVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY FT RHNSELNYATIDESDIGTILHILEHKNREQVLYLNVKYISNLNPSTIMSGWTTLATALQ FT ADKAIVNDYIKNNNLNI" FT misc_feature complement(5462..5586) FT /note="Match to rve Score 135.52" XX SQ Sequence 5586 BP; 1571 A; 866 C; 1021 G; 2128 T; 0 other; actgagtata ggtattgtat taactgggtt ataatgttac ctatcactaa tatagctcat 60 aactgaactg aggaacgagg ttcagcagta gctctattta tagtattcag ataatattga 120 tcttaataga ttatcattaa gatcaatctc catatcgtat catacatggt acgatatata 180 attagaacat gtgacatata gtgatactca acgtagtgta ttatagcgta gtgtagtatt 240 gctgacattg ccctccccaa gattttctat gtaaatctga ggataagtca tatgttctca 300 gatatttaga ttattgtttt taatataatc attgacaatt gctttgtccg cttgtagcgc 360 tgtagctaat gtagtccatc ctgacataat agtactcgga tttagattcg aaatgtactt 420 gacatttaag tagagtactt gttctctgtt tttatgttct aggatatgaa gaattgttcc 480 aatatcagac tcatcaatgg tagcgtaatt gagttctgaa ttatgtcgat acttttctag 540 gtgagaaaca tgaaaagtag atgaaaacat gtgcttgatt gaatctggaa gatccaattc 600 atagttgttt ggacccgact tctgtaacac atagaacggt cctgcaaaac taggtgctaa 660 tttattggat ttatgaagaa aacctgtttt cgttcttttg accataacta ggtctccagg 720 ttgaaattct tcaatttctt gtattttcat atcgaaatac tttttcatct ttatgttgtt 780 tgtattcaag tgttctttaa ctgtttgaaa tacttggatc gtttcctgag agttttcgtc 840 agttttgtca ctaaagctag gtaactctaa aggtgataaa gctggtgaat agcgatgtac 900 tatctcaaaa ggtgtcattt gagttgctga atgtatcgca ttgttgtaag attgttgcac 960 tagggatata tgatctaccc atgtatttgg atgtgtgcta catacacatc ttagtaattt 1020 ctccacagtt tggtttgtac gctcagtttg tccatcagtt tgtggtctgt atggtaacga 1080 aaatttcata acgaaattat atttatgtgc gaaatctttc cacgtttggg aagtaaaaat 1140 atgatcatta tctgcaatga tttcttttgg attgccgaaa taagcaataa ctcgttgatc 1200 aaacattcga gctgtttgct ctgctgtaat ggatttcgta caaggtacta agattgccat 1260 ttttgaaaat cggtcaacta ccacgaaaag tgcattataa ccagatgatt ctggtaaagc 1320 tgtaataaaa tccattgata aagattccca aggtctttct gatgggggaa ttggttgtaa 1380 aggtccataa ggtttatgat tcctagattt gtttatttga catgtatggc agttctgtac 1440 atattcttgt atttgttttc ttattccttt ccacgtaaat ctacgtaata taatgtttgt 1500 aagaagttca atgcctggat gaatcaattt accttcttca tgatactttt taataattgt 1560 cctagtcagc tgagtatcat taggtaataa gatttggtct ttactgttaa ttagtaagcc 1620 atctttgagt tggatattct cttccactcg tttgtcttca ttgtttagta aattcaacaa 1680 ttttgtatca ttcgtatatt ctgtaaccac ttggttttta aaatcatcgg ttatcgagat 1740 ttgattaaca aagttgatac tattgtcttc tgaatctttt ggaattggtt ctgtttcgtc 1800 aacaattctg gataaggcat cagctatgtg atttgctgat ccaggtctgt agttaatttc 1860 aaagttgaag tcttgtaaaa ataattgcca acgagctaaa cgtttgtttt caggctcgga 1920 ttcgttagta atgcgaccaa ttaagtttcg atggtctgtt aaaattttga aaggttcgat 1980 agtggattct aaatagtgtc tccaatgttt gagagactta atgattgcaa gcatttcttt 2040 gtccgatacg ctataattta attgtgcttt agacatcttt gctgaatagt atccaacagg 2100 atagtattta tcatcatcat gtttttgaga caatacggct cctacagcga catctgaagc 2160 atcagtttct agtagaatct ttttactgaa atcaaagtgt cgtagcaccg gaggcgaaac 2220 taaacattgt ttaatgtttt ctatcgcttg ggtttgtgtt ggtgtccatt tccagcgtac 2280 atcctttttc aaaagattat tgagtggatg tgttaattgt gatgtctttg gaatgaattt 2340 cctaagataa ttgacagaac ctagaaattg tcgtaattct ttacgattct taggttgctt 2400 ccattgtaag actttgtcta tattttcttg acaaggcgta aatccttttt ccgaaatgtg 2460 ataccctata aattttactt gtgattgatg aaattcacat tttgcttgat tgataattaa 2520 gttcgcattt tttaatttct gtagaacgtc tttaacatgt tttacatgtt cagattccga 2580 ttttgaatga attaaaatat tatccatata acatactaca tgcgattctt tgacttcacc 2640 aagtattgta ttgataaagt attgaaaatg tgctggagct atagatatgc cataaggcat 2700 tactagatat tcaaaaactc cacgaggaca gcgaaaagca agtttatgtt catctccttt 2760 tcttactcgt atcaagtgat aggcactttt gaggtcaagt ttagtaaaaa ttgtagaacc 2820 ttgtatttta gcaagtaatt gttcaataag tggtaacgga tatatattgg gtttgacata 2880 cttatttaaa ggtttgtagt caaccaccat tctcaaggtg ccttcctttt tcggaacgaa 2940 cattactgga caggcgttaa tggctttaga ttctcgtata attccacttt ttaatccttg 3000 attaatttca tcattcatag cttgcatttt tcccggtggt agcgggtaat ttctgatagg 3060 taatctgtag ttttcttgag ttagttcaac ttcaaattct aaccctttta ttggctttgg 3120 tagcttttcc gtattggttt ctgcagtaat gtctttgaat tctttataga tatctggtaa 3180 ctcaggttcc ttgacaatat ttgaaacttt gttcatttga gagagcgtgt gtttactgct 3240 agatatttca atgttattgt catataatgt tgtgaaggag atagcagctg gatgcgaaaa 3300 tttctttaca accaagaatt ctgttttgat tgatattcca tttagactta tgttaagttt 3360 tattgttttg cgattaatct tatttggata aactccacca tatatcacac tttttgacca 3420 gggtctggta ggcagtttat gtgctcgaac agtttcttct gttataatat ttgcttgagc 3480 gcccgtatcg attagacagg gtattgagca cttgaagtct ggaagttcag cttgtaatac 3540 catttcgtaa cgtttcctag tatgatttag gaatttgtta gatgagtatt ctattctcga 3600 aacatttgtc ttcctcaggt ttctgctatt agtggtgtta tttttctttg aaagggactc 3660 ttttcctaga tttttatttt gcggttgaaa acgcttgtga gttttaccat acgaggctgt 3720 tcttttgtcc tctaaaaagt cataaatttc actgatttct gatttccagt aatttctttc 3780 ctttaatttc cttaaggaat atggcagcat ccataatata aacaagcgag tatggaaatc 3840 atcaacattt gcttttgaca tgagtttcct tataaattga actttgtcca attgatttct 3900 aaaaccttca aatgttttag ttaaacgatc acctttgttg gatccttgta ctttccctgt 3960 ttgtctgagt aattcttgcc atgtaagact tccattctca gaaaacatgc gttcagcgaa 4020 ttgttgctct aattcttcta ggtgattcaa tgtatactgt cttttagtat gctcatttgg 4080 gaataatgaa gggtattcag taaagtgttg atcaagtttt gaaatgtaac tttcaacatc 4140 cttatttgga tcgaatttcc ctatctctgg tacatgcttc gataatattt ttgcaaaaag 4200 gtttattaaa tgttcgtctg atgtttgaat tccatccaaa ttctctggtc tccatcgttt 4260 tgctcttgct ttcatataac gataatttgc gtaggacatt gtatatgttt ccctttggga 4320 gatttcaaaa gggataacag tccttccaaa gttccttctc ctttgaaccc agaaggagag 4380 aaatatatat atttatgata tatatttatt caataattcc tttttcctaa aaggagttaa 4440 ttgtagatca caagagttca gttattgtaa gctacgcagt ttggtatctg atttaaggat 4500 acgtagaact gcggtgagtt ttccttgtga tctattatat tacaatacac aggttgtata 4560 agtagcaact gagtataggt attgtattaa ctgggttata atgttaccta tcactaatat 4620 agctcataac tgaactgagg aacgaggttc agcagtagct ctatttatag tattcagata 4680 atattgatct taatagatta tcattaagat caatctccat atcgtatcat acatggtacg 4740 atatataatt agaacatgtg acatatagtg atactcaacg tagtgtatta tagcgtagtg 4800 tagtattgct gacattgccc tccccaagat tttctatgta aatctgagga taagtcatat 4860 gttctcagat atttagatta ttgtttttaa tataatcatt gacaattgct ttgtccgctt 4920 gtagcgctgt agctaatgta gtccatcctg acataatagt actcggattt agattcgaaa 4980 tgtacttgac atttaagtag agtacttgtt ctctgttttt atgttctagg atatgaagaa 5040 ttgttccaat atcagactca tcaatggtag cgtaattgag ttctgaatta tgtcgatact 5100 tttctaggtg agaaacatga aaagtagatg aaaacatgtg cttgattgaa tctggaagat 5160 ccaattcata gttgtttgga cccgacttct gtaacacata gaacggtcct gcaaaactag 5220 gtgctaattt attggattta tgaagaaaac ctgttttcgt tcttttgacc ataactaggt 5280 ctccaggttg aaattcttca atttcttgta ttttcatatc gaaatacttt ttcatcttta 5340 tgttgtttgt attcaagtgt tctttaactg tttgaaatac ttggatcgtt tcctgagagt 5400 tttcgtcagt tttgtcacta aagctaggta actctaaagg tgataaagct ggtgaatagc 5460 gatgtactat ctcaaaaggt gtcatttgag ttgctgaatg tatcgcattg ttgtaagatt 5520 gttgcactag ggatatatga tctacccatg tatttggatg tgtgctacat acacatctta 5580 gtaatt 5586 //